Indian Council of Agricultural Research
(Agricultural Knowledge Management Information System)


ICAR-Central Plantation Crops Research Institute, Kudlu P.O., Kasaragod-671124, Kerala (www.cpcri.icar.gov.in)
Click Here to See Management Committee
Instrument Details
Instrument/Facility Name: Service:Analysis of RNA Sequence Reads and Bacterial Genome
Make                                   : Dell
Model                                  : Dell Optiplex 7050
Specification   :Dell Optiplex 7050 MT (Intel Core i7 7700/32GB/2TB),High end workstation for analysis of RNA sequence reads and bacterial genomes. Easy graphic workflow for de novo assembly and reference based RNA seq analysis

Click to ViewThe Dell Optiplex 7050 MT Black workstation is a linux (ubuntu 16.04 LTS) based 64bit operating system, which have Intel Core i7 7700 CPU, Intel HD Graphics 630(Kaby Lake GT2) and 2 TB hard disc space. The machine is good platform for whole type of bioinformatics analysis and it includes open source software for RNA seq and DNA seq analyses.

  Working Principles
Click to ViewThe workstation is incorporated with open source RNAseq and DNAseq analysis softwares. The NGS seq analysis can be carried out four steps Step 1: Raw data retrieval Step2: Data preprocessing (QC analysis, Trimming, adaptor removal etc.) Step 3: Data processing (Assembly/ Mapping) Step4: Data interpretation (Annotation, Quantification Differential expression analysis etc.)

  Applications
  User Instructions
RNAseq, DNAseq (bacterial) analysis, secretome analysis, miRNA analysis, biological pathway analysis and reconstruction.As per the softwares used.

  Contact Us
Contact No. 04994232090
Email Id director.cpcri@icar.gov.in

  Service:Analysis of RNA Sequence Reads and Bacterial Genome Charges
Procedure Name
Industry
University
National LAB/R&D
Remark
Analysis of RNA Sequence Reads and Bacterial Genome
30000
14500
15000
Prior confirmation may be obtained from the Institute before taking DD / sending samples/files.

Additional Rs 100/-towards postal charges if result are to be posted
The Demand Draft should be in favour of "ICAR-Unit-CPCRI Kasaragod"
Letter, DD & Samples send to "The Director, ICAR-CPCRI, Kudlu P.O Kasaragod - 671 124. Kerala."